blob: 2f15cd392f656b6814cbbd20997079587312b76d (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Hisea(MakefilePackage):
"""HISEA is an efficient all-vs-all long read aligner for SMRT sequencing
data. Its algorithm is designed to produce highest alignment sensitivity
among others."""
homepage = "https://doi.org/10.1186/s12859-017-1953-9"
url = "https://github.com/lucian-ilie/HISEA"
version('2017.12.26', '54211bdc33b7ce52a8f1e76845935eb8',
url='https://github.com/lucian-ilie/HISEA/tarball/39e01e98caa0f2101da806ca59306296effe789c')
depends_on('boost')
def patch(self):
if self.spec.target.family == 'aarch64':
filter_file('-mpopcnt', '', 'Makefile')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('hisea', prefix.bin)
|
