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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Htslib(AutotoolsPackage):
"""C library for high-throughput sequencing data formats."""
homepage = "https://github.com/samtools/htslib"
version('1.9', sha256='e04b877057e8b3b8425d957f057b42f0e8509173621d3eccaedd0da607d9929a')
version('1.8', sha256='c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1')
version('1.7', sha256='be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6')
version('1.6', sha256='9588be8be0c2390a87b7952d644e7a88bead2991b3468371347965f2e0504ccb')
version('1.5', sha256='a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d')
version('1.4', sha256='5cfc8818ff45cd6e924c32fec2489cb28853af8867a7ee8e755c4187f5883350')
version('1.3.1', sha256='49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6')
version('1.2', sha256='125c01421d5131afb4c3fd2bc9c7da6f4f1cd9ab5fc285c076080b9aca24bffc')
depends_on('zlib')
depends_on('bzip2', when="@1.4:")
depends_on('xz', when="@1.4:")
depends_on('m4', when="@1.2")
depends_on('autoconf', when="@1.2")
depends_on('automake', when="@1.2")
depends_on('libtool', when="@1.2")
# v1.2 uses the automagically assembled tarball from .../archive/...
# everything else uses the tarballs uploaded to the release
def url_for_version(self, version):
if version.string == '1.2':
return 'https://github.com/samtools/htslib/archive/1.2.tar.gz'
else:
url = "https://github.com/samtools/htslib/releases/download/{0}/htslib-{0}.tar.bz2"
return url.format(version.dotted)
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