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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Infernal(AutotoolsPackage):
"""Infernal (INFERence of RNA ALignment) is for searching DNA sequence
databases for RNA structure and sequence similarities. It is an
implementation of a special case of profile stochastic context-free
grammars called covariance models (CMs)."""
homepage = "http://eddylab.org/infernal/"
url = "http://eddylab.org/infernal/infernal-1.1.2.tar.gz"
version("1.1.4", sha256="f9493c7dee9fbf25f6405706818883d24b9f5e455121a0662c96c8f0307f95fc")
version("1.1.3", sha256="3b98a6a3a0e7b01aa077a0caf1e958223c4d8f80a69a4eb602ca59a3475da85e")
version("1.1.2", sha256="ac8c24f484205cfb7124c38d6dc638a28f2b9035b9433efec5dc753c7e84226b")
variant("mpi", default=False, description="Enable MPI parallel support")
depends_on("mpi", when="+mpi")
# https://github.com/EddyRivasLab/infernal/issues/30
conflicts("target=aarch64:", msg="infernal is only available for x86_64 and PowerPC")
def configure_args(self):
args = []
if "+mpi" in self.spec:
args.append("--enable-mpi")
else:
args.append("--disable-mpi")
return args
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