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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Kaiju(MakefilePackage):
"""Kaiju is a program for the taxonomic classification
of high-throughput sequencing reads."""
homepage = "https://github.com/bioinformatics-centre/kaiju"
url = "https://github.com/bioinformatics-centre/kaiju/archive/v1.6.2.zip"
license("GPL-3.0-or-later")
version("1.6.2", sha256="2685fed7e27ddeb26530fd60a4b388f2d5f3e29aaa79f8e2e6abcbac64075db8")
build_directory = "src"
depends_on("perl-io-compress", type="run")
depends_on("py-htseq", type="run")
def edit(self, spec, prefix):
# Replace ftp:// with https://
makedb = FileFilter("util/makeDB.sh")
makedb.filter("ftp://", "https://", string=True)
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
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