1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import glob
import os
from spack.package import *
class Kraken2(Package):
"""Kraken2 is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies."""
homepage = "https://ccb.jhu.edu/software/kraken2/"
url = "https://github.com/DerrickWood/kraken2/archive/v2.1.1.tar.gz"
maintainers("rberg2")
license("MIT")
version("2.1.2", sha256="e5f431e8bc3d5493a79e1d8125f4aacbad24f9ea2cc9657b66da06a32bef6ff3")
version("2.1.1", sha256="8f3e928cdb32b9e8e6f55b44703d1557b2a5fc3f30f63e8d16e465e19a81dee4")
version(
"2.0.8-beta", sha256="f2a91fc57a40b3e87df8ac2ea7c0ff1060cc9295c95de417ee53249ee3f7ad8e"
)
version(
"2.0.7-beta", sha256="baa160f5aef73327e1a79e6d1c54b64b2fcdaee0be31b456f7bc411d1897a744"
)
version(
"2.0.6-beta", sha256="d77db6251179c4d7e16bc9b5e5e9043d25acf81f3e32ad6eadfba829a31e1d09"
)
depends_on("perl", type=("build", "run"))
depends_on("rsync", type=("run"))
depends_on("wget", type=("run"))
def install(self, spec, prefix):
installer = Executable("./install_kraken2.sh")
installer(self.stage.source_path)
mkdirp(prefix.bin)
files = glob.iglob("*")
for file in files:
if os.path.isfile(file):
install(file, prefix.bin)
|
