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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Last(MakefilePackage):
"""LAST finds similar regions between sequences, and aligns them. It is
designed for comparing large datasets to each other (e.g. vertebrate
genomes and/or large numbers of DNA reads)."""
homepage = "http://last.cbrc.jp/"
url = "http://last.cbrc.jp/last-869.zip"
git = "https://gitlab.com/mcfrith/last.git"
maintainers("snehring")
license("GPL-3.0-only")
version("1499", commit="2cc68d3ba8ae5ca46ceeb69302aef18b9db04f46")
version("1282", commit="4368be912f4759e52b549940276f1adf087f489a")
version("869", sha256="6371a6282bc1bb02a5e5013cc463625f2ce3e7746ff2ea0bdf9fe6b15605a67c")
depends_on("zlib-api")
def edit(self, spec, prefix):
if not spec.satisfies("target=x86_64:"):
filter_file("-msse4", "", "makefile")
files = ["mat-doc.sh", "mat-inc.sh", "seed-doc.sh", "seed-inc.sh"]
if spec.satisfies("@1282:"):
files.append("gc-inc.sh")
with working_dir("build"):
for f in files:
set_executable(f)
def install(self, spec, prefix):
make("install", "prefix=%s" % prefix)
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