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|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Libpressio(CMakePackage, CudaPackage):
"""A generic abstraction for the compression of dense tensors"""
# codarcode gets "stable" releases ~1/yr; robertu94 contains development versions
homepage = "https://github.com/codarcode/libpressio"
url = "https://github.com/robertu94/libpressio/archive/0.31.1.tar.gz"
git = "https://github.com/robertu94/libpressio"
tags = ["e4s"]
maintainers("robertu94")
tests_require_compiler = True
version("master", branch="master")
version("develop", branch="develop")
version("0.95.1", sha256="c2e4f81d1491781cd47f2baba64acfbba9a7d6203c9b01369f8b1a8f94e0bb2b")
version("0.94.0", sha256="4250597cdd54043a7d5009ffc3feea3eac9496cdd38ea3f61f9727b7acd09add")
version("0.93.0", sha256="1da5940aaf0190a810988dcd8f415b9c8db53bbbdfcb627d899921c89170d990")
version("0.92.0", sha256="e9cab155deb07aabdca4ece2c826be905ed33f16c95f82f24eb01d181fce6109")
version("0.91.1", sha256="35cd4b93e410a83c626c9c168d59ade3bf26a453bcbf50dfd77b6d141184b97c")
version("0.91.0", sha256="6220988dc964c36cdffdbc5e055261ac7a0189ad80b67a962189683648209d2e")
version("0.90.2", sha256="1fe3f4073952a96bda1b3d7c237bc5d64d1f7bf13bfe1830074852ea33006bf9")
version("0.88.3", sha256="b2df2ed11f77eb2e07206f7bdfa4754017559017235c3324820021ef451fd48b")
version("0.88.2", sha256="f5de6aff5ff906b164d6b2199ada10a8e32fb1e2a6295da3f0b79d9626661a46")
version("0.88.1", sha256="d7fe73a6b2d8de6d19c85e87888dcf1a62956f56b4e6dfd23e26901740031e00")
version("0.88.0", sha256="4358441f0d10559d571327162a216617d16d09569a80e13ad286e3b7c41c5b9b")
version("0.87.0", sha256="2bea685e5ed3a1528ea68ba4a281902ff77c0bebd38ff212b6e8edbfa263b572")
version("0.86.7", sha256="2a6319640a018c39aa93aaf0f027fd496d7ea7dc5ac95509313cf1b4b6b1fb00")
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version("0.86.4", sha256="52a1d932b30a9390e836ea4b102225b176f8feebbac598a0ab3a81a9ac83775c")
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version("0.33.0", sha256="61200855a0846ce765b686fa368496f44534e633031811803ba2cb31f94c25b1")
version("0.32.0", sha256="187e75fc6d3f84003829d2b8aec584e99d72d65f2d82835998714ae05ae008af")
version("0.31.1", sha256="32c1fd8319fbbb844a0a252d44761f81f17c6f3549daadce47e81524d84605a4")
version("0.31.0", sha256="9d4bc8b2c1a210a58f34216cebe7cd5935039d244b7e90f7e2792bda81ff7ddc")
version("0.30.1", sha256="e2249bdced68d80a413de59f8393922553a8900a14e731030e362266e82a9af8")
version("0.30.0", sha256="91de53099d9381e3744e7a1ac06d2db0f9065378c4d178328b78ac797ee3ec65")
version("0.29.1", sha256="ced1e98fbd383669e59ec06d2e0c15e27dbceda9ac5569d311c538b2fe6d3876")
version("0.29.0", sha256="a417a1d0ed75bd51131b86fba990502666d8c1388ad6282b3097aa461ccf9785")
version("0.28.0", sha256="5c4e0fe8c7c80615688f271b57b35ee9d924ac07c6d3d56d0303e610338ed332")
version("0.27.1", sha256="3f7d2401ff8b113781d93c5bf374f47ca35b2f962634c6310b73620da735e63d")
version("0.27.0", sha256="387ee5958de2d986095cda2aaf39d0bf319d02eaeeea2a565aea97e6a6f31f36")
version("0.26.0", sha256="c451591d106d1671c9ddbb5c304979dd2d083e0616b2aeede62e7a6b568f828c")
variant("blosc", default=False, description="support the blosc lossless compressors")
variant("fpzip", default=False, description="support for the FPZIP lossy compressor")
variant("hdf5", default=False, description="support reading and writing from hdf5 files")
variant("magick", default=False, description="support the imagemagick image compressors")
variant(
"mgard", default=False, description="support for the MAGARD error bounded lossy compressor"
)
variant("python", default=False, description="build the python wrappers")
variant("sz", default=False, description="support for the SZ error bounded lossy compressor")
variant("zfp", default=False, description="support for the ZFP error bounded lossy compressor")
variant("boost", default=False, description="support older compilers using boost")
variant("petsc", default=False, description="support IO using petsc format")
variant("mpi", default=False, description="support for launching processes using mpi")
variant("lua", default=False, description="support for composite metrics using lua")
variant(
"libdistributed", default=False, description="support for distributed multi-buffer support"
)
variant("ftk", default=False, description="build support for the feature tracking toolkit")
variant("digitrounding", default=False, description="build support for the digit rounding")
variant("bitgrooming", default=False, description="build support for the bitgrooming")
variant("openmp", default=False, description="build plugins that use openmp")
variant("docs", default=False, description="build and install manual pages")
variant("remote", default=False, description="build the remote launch plugin")
variant("json", default=False, description="build the JSON support")
variant("szauto", default=False, description="build szauto support")
variant("unix", default=False, description="build support for unixisms like mmap and rusage")
variant("ndzip", default=False, description="build support for the NDZIP compressor")
variant("arc", default=False, description="build support for the ARC error correction tool")
variant("netcdf", default=False, description="build support for the NDFCDF data format")
variant("sz3", default=False, description="build support for the SZ3 compressor family")
variant("mgardx", default=False, description="build support for the MGARDx compressor")
variant("bzip2", default=False, description="build support for the bzip2 compressor")
variant("qoz", default=False, description="build support for the qoz compressor")
variant("core", default=True, description="build core builtin libraries")
variant(
"cusz", default=False, description="build support for the cusz compressor", when="@0.86.0:"
)
# cufile was only added to the .run file installer for cuda in 11.7.1
# dispite being in the APT/RPM packages for much longer
# a external install the cufile libraries could use an earlier version
# which provides these libraries
depends_on("cuda@11.7.1:", when="+cuda")
depends_on("boost", when="@:0.51.0+boost")
depends_on("libstdcompat+boost", when="+boost")
depends_on("libstdcompat@0.0.14:", when="@0.79.0:")
depends_on("libstdcompat@0.0.13:", when="@0.73.0:")
depends_on("libstdcompat@0.0.10:", when="@0.71.3:")
depends_on("libstdcompat@0.0.7:", when="@0.70.3:")
depends_on("libstdcompat@0.0.6:", when="@0.70.2:")
depends_on("libstdcompat@0.0.5:", when="@0.63.0:")
depends_on("libstdcompat@0.0.3:", when="@0.60.0:")
depends_on("libstdcompat", when="@0.52.0:")
depends_on("c-blosc", when="+blosc")
depends_on("fpzip", when="+fpzip")
depends_on("hdf5", when="+hdf5")
# this might seem excessive, but if HDF5 is external and parallel
# we might not get the MPI compiler flags we need, so depend on this
# explicitly
depends_on("mpi@2:", when="+hdf5 ^hdf5+mpi")
depends_on("imagemagick", when="+magick")
depends_on("mgard", when="+mgard")
depends_on("python@3:", when="+python", type=("build", "link", "run"))
depends_on("py-numpy", when="+python", type=("build", "link", "run"))
depends_on("swig@3.12:", when="+python", type="build")
depends_on("sz@2.1.8.1:", when="@0.55.2:+sz")
depends_on("sz@2.1.11.1:", when="@0.55.3:+sz")
depends_on("sz@2.1.12:", when="@0.69.0:+sz")
depends_on("fftw", when="+sz ^sz@:2.1.10")
depends_on("zfp", when="+zfp")
depends_on("petsc", when="+petsc")
depends_on("mpi@2:", when="+mpi")
depends_on("lua-sol2", when="+lua")
depends_on("libdistributed@0.0.11:", when="+libdistributed")
depends_on("libdistributed@0.4.0:", when="@0.85.0:+libdistributed")
depends_on("pkgconfig", type="build")
depends_on("ftk@master", when="+ftk")
depends_on("digitrounding", when="+digitrounding")
depends_on("bitgroomingz", when="+bitgrooming")
depends_on("cmake@3.14:", type="build")
depends_on("py-mpi4py", when="@0.54.0:+mpi+python", type=("build", "link", "run"))
depends_on("py-numcodecs", when="@0.54.0:+python", type="run")
depends_on("doxygen+graphviz", when="+docs", type="build")
depends_on("curl", when="+remote")
depends_on("nlohmann-json+multiple_headers", when="+remote")
depends_on("nlohmann-json+multiple_headers", when="+json")
depends_on("szauto", when="+szauto")
depends_on("ndzip", when="+ndzip")
depends_on("arc", when="+arc")
depends_on("netcdf-c", when="+netcdf")
depends_on("mgardx", when="+mgardx")
conflicts(
"^ mgard@2022-11-18",
when="@:0.88.3+mgard",
msg="mgard@2022-11-18 is not supported before 0.89.0",
)
conflicts(
"+mgardx", when="+szauto"
) # SZ auto and MGARDx cause symbol conflicts with each other
conflicts(
"~json",
when="@0.57.0:+remote",
msg="JSON support required for remote after version 0.57.0",
)
depends_on("sz3", when="+sz3")
depends_on("bzip2", when="+bzip2")
depends_on("qoz", when="+qoz")
depends_on("cusz", when="+cusz")
extends("python", when="+python")
def cmake_args(self):
args = []
if "+python" in self.spec:
args.append("-DLIBPRESSIO_PYTHON_SITELIB={0}".format(python_platlib))
args.append("-DBUILD_PYTHON_WRAPPER=ON")
args.append("-DPython3_EXECUTABLE={0}".format(self.spec["python"].command))
if "+mpi" in self.spec:
args.append("-DLIBPRESSIO_HAS_MPI4PY=ON")
if "+hdf5" in self.spec:
args.append("-DLIBPRESSIO_HAS_HDF=ON")
args.append("-DHDF5_ROOT=" + self.spec["hdf5"].prefix)
if "+sz" in self.spec:
args.append("-DLIBPRESSIO_HAS_SZ=ON")
if "+szauto" in self.spec:
args.append("-DLIBPRESSIO_HAS_SZ_AUTO=ON")
if "+zfp" in self.spec:
args.append("-DLIBPRESSIO_HAS_ZFP=ON")
if "+fpzip" in self.spec:
args.append("-DLIBPRESSIO_HAS_FPZIP=ON")
if "+blosc" in self.spec:
args.append("-DLIBPRESSIO_HAS_BLOSC=ON")
if "+magick" in self.spec:
args.append("-DLIBPRESSIO_HAS_MAGICK=ON")
if "+mgard" in self.spec:
args.append("-DLIBPRESSIO_HAS_MGARD=ON")
if "+petsc" in self.spec:
args.append("-DLIBPRESSIO_HAS_PETSC=ON")
if "+boost" in self.spec:
args.append("-DLIBPRESSIO_CXX_VERSION=11")
if "+mpi" in self.spec:
args.append("-DLIBPRESSIO_HAS_MPI=ON")
if "+lua" in self.spec:
args.append("-DLIBPRESSIO_HAS_LUA=ON")
if "+libdistributed" in self.spec:
args.append("-DLIBPRESSIO_HAS_LIBDISTRIBUTED=ON")
if "+ftk" in self.spec:
args.append("-DLIBPRESSIO_HAS_FTK=ON")
if "+bitgrooming" in self.spec:
args.append("-DLIBPRESSIO_HAS_BIT_GROOMING=ON")
if "+digitrounding" in self.spec:
args.append("-DLIBPRESSIO_HAS_DIGIT_ROUNDING=ON")
if "+openmp" in self.spec:
args.append("-DLIBPRESSIO_HAS_OPENMP=ON")
if "+docs" in self.spec:
args.append("-DBUILD_DOCS=ON")
args.append("-DLIBPRESSIO_INSTALL_DOCS=ON")
if "+remote" in self.spec:
args.append("-DLIBPRESSIO_HAS_REMOTELAUNCH=ON")
if "+json" in self.spec:
args.append("-DLIBPRESSIO_HAS_JSON=ON")
if "+unix" in self.spec:
args.append("-DLIBPRESSIO_HAS_LINUX=ON")
if "+ndzip" in self.spec:
args.append("-DLIBPRESSIO_HAS_NDZIP=ON")
if "+arc" in self.spec:
args.append("-DLIBPRESSIO_HAS_ARC=ON")
if "+netcdf" in self.spec:
args.append("-DLIBPRESSIO_HAS_NETCDF=ON")
if "+sz3" in self.spec:
args.append("-DLIBPRESSIO_HAS_SZ3=ON")
if "+cuda" in self.spec:
args.append("-DLIBPRESSIO_HAS_CUFILE=ON")
args.append("-DLIBPRESSIO_HAS_CUDA=ON")
if "+mgardx" in self.spec:
args.append("-DLIBPRESSIO_HAS_MGARDx=ON")
if "+bzip2" in self.spec:
args.append("-DLIBPRESSIO_HAS_BZIP2=ON")
if "+qoz" in self.spec:
args.append("-DLIBPRESSIO_HAS_QoZ=ON")
if "+cusz" in self.spec:
args.append("-DLIBPRESSIO_HAS_CUSZ=ON")
if self.spec.satisfies("+cusz +cuda"):
args.append("-DCMAKE_EXE_LINKER_FLAGS=-Wl,--allow-shlib-undefined")
if "+core" in self.spec:
args.append("-DLIBPRESSIO_BUILD_MODE=FULL")
else:
args.append("-DLIBPRESSIO_BUILD_MODE=CORE")
if self.run_tests:
args.append("-DBUILD_TESTING=ON")
else:
args.append("-DBUILD_TESTING=OFF")
return args
def setup_run_environment(self, env):
if "+hdf5" in self.spec and "+json" in self.spec:
env.prepend_path("HDF5_PLUGIN_PATH", self.prefix.lib64)
@run_after("build")
@on_package_attributes(run_tests=True)
def build_test(self):
make("test")
@run_after("build")
def install_docs(self):
if "+docs" in self.spec:
with working_dir(self.build_directory):
make("docs")
@run_after("install")
def copy_test_sources(self):
if self.version < Version("0.88.3"):
return
srcs = [
join_path("test", "smoke_test", "smoke_test.cc"),
join_path("test", "smoke_test", "CMakeLists.txt"),
]
self.cache_extra_test_sources(srcs)
def test(self):
if self.version < Version("0.88.3"):
return
args = self.cmake_args()
args.append(
"-S{}".format(join_path(self.test_suite.current_test_cache_dir, "test", "smoke_test"))
)
args.append(
"-DCMAKE_PREFIX_PATH={};{}".format(self.spec["libstdcompat"].prefix, self.prefix)
)
self.run_test("cmake", args, purpose="cmake configuration works")
# this works for cmake@3.14: which is required for this package
args = ["--build", "."]
self.run_test("cmake", args, purpose="cmake builds works")
self.run_test("./pressio_smoke_tests", expected="all passed")
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