var/spack/repos/builtin/packages/mash/package.py


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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class Mash(AutotoolsPackage):
    """
    Fast genome and metagenome distance estimation using MinHash.
    """

    homepage = "http://mash.readthedocs.org/"
    url      = "https://github.com/marbl/Mash/archive/refs/tags/v2.3.tar.gz"

    maintainers = ['marcusboden']

    version('2.3', sha256='f96cf7305e010012c3debed966ac83ceecac0351dbbfeaa6cd7ad7f068d87fe1')

    conflicts('%gcc@11:', msg='mash cannot be build with gcc >= 11')

    depends_on("autoconf", type='build')
    depends_on("automake", type='build')
    depends_on("libtool", type='build')
    depends_on("m4", type='build')
    depends_on("capnproto")
    depends_on("gsl")

    def configure_args(self):
        args = []
        args.append("--with-capnp=" + self.spec['capnproto'].prefix)
        args.append("--with-gsl=" + self.spec['gsl'].prefix)
        return args