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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Mefit(Package):
"""This pipeline will merge overlapping paired-end reads, calculate
merge statistics, and filter reads for quality."""
homepage = "https://github.com/nisheth/MeFiT"
git = "https://github.com/nisheth/MeFiT.git"
version("1.0", commit="0733326d8917570bbf70ff5c0f710bf66c13db09")
depends_on("py-numpy")
depends_on("py-htseq")
depends_on("jellyfish")
depends_on("casper %gcc@4.8.5")
def install(self, spec, prefix):
install_tree(".", prefix)
def setup_run_environment(self, env):
env.prepend_path("PATH", self.prefix)
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