blob: 18cdd064c8527df0c69380f69ca61461a182899e (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Meraculous(CMakePackage):
"""Meraculous is a while genome assembler for Next Generation Sequencing
data geared for large genomes."""
homepage = "http://jgi.doe.gov/data-and-tools/meraculous/"
url = "https://downloads.sourceforge.net/project/meraculous20/Meraculous-v2.2.4.tar.gz"
git = "https://bitbucket.org/berkeleylab/genomics-meraculous2.git"
version('2.2.5.1', branch='release-2.2.5.1')
version('2.2.4', '349feb6cb178643a46e4b092c87bad3a')
depends_on('perl', type=('build', 'run'))
depends_on('boost@1.5.0:')
depends_on('gnuplot@3.7:')
depends_on('perl-log-log4perl', type=('build', 'run'))
conflicts('%gcc@6.0.0:', when='@2.2.4')
def patch(self):
edit = FileFilter('CMakeLists.txt')
edit.filter("-static-libstdc\+\+", "")
def setup_environment(self, spack_env, run_env):
run_env.set('MERACULOUS_ROOT', self.prefix)
run_env.prepend_path('PERL5LIB', self.prefix.lib)
|
