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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from spack.pkg.builtin.boost import Boost
class Metabat(CMakePackage):
"""MetaBAT, an efficient tool for accurately reconstructing single
genomes from complex microbial communities."""
homepage = "https://bitbucket.org/berkeleylab/metabat"
url = "https://bitbucket.org/berkeleylab/metabat/get/v2.12.1.tar.gz"
version('2.15', sha256='550487b66ec9b3bc53edf513d00c9deda594a584f53802165f037bde29b4d34e')
version('2.14', sha256='d43d5e91afa8f2d211a913739127884669516bfbed870760597fcee2b513abe2')
version('2.13', sha256='aa75a2b62ec9588add4c288993821bab5312a83b1259ff0d508c215133492d74')
version('2.12.1', sha256='e3aca0656f56f815135521360dc56667ec26af25143c3a31d645fef1a96abbc2', deprecated=True)
version('2.11.2', sha256='9baf81b385e503e71792706237c308a21ff9177a3211c79057dcecf8434e9a67', deprecated=True)
depends_on('cmake', type='build', when='@2.13:')
depends_on('boost@1.55.0:', type=('build', 'run'))
# TODO: replace this with an explicit list of components of Boost,
# for instance depends_on('boost +filesystem')
# See https://github.com/spack/spack/pull/22303 for reference
depends_on(Boost.with_default_variants, type=('build', 'run'))
depends_on('perl', type='run')
depends_on('zlib', type='link')
depends_on('ncurses', type='link')
def setup_build_environment(self, env):
env.set('BOOST_ROOT', self.spec['boost'].prefix)
def install_args(self, spec, prefix):
return ["PREFIX={0}".format(prefix)]
@run_after('build')
def fix_perl_scripts(self):
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env perl',
'aggregateBinDepths.pl')
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env perl',
'aggregateContigOverlapsByBin.pl')
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