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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Metabat(SConsPackage):
"""MetaBAT, an efficient tool for accurately reconstructing single
genomes from complex microbial communities."""
homepage = "https://bitbucket.org/berkeleylab/metabat"
url = "https://bitbucket.org/berkeleylab/metabat/get/v2.12.1.tar.gz"
version('2.12.1', sha256='e3aca0656f56f815135521360dc56667ec26af25143c3a31d645fef1a96abbc2')
version('2.11.2', sha256='9baf81b385e503e71792706237c308a21ff9177a3211c79057dcecf8434e9a67')
depends_on('boost@1.55.0:', type=('build', 'run'))
depends_on('perl', type='run')
depends_on('zlib', type='link')
depends_on('ncurses', type='link')
def setup_environment(self, spack_env, run_env):
spack_env.set('BOOST_ROOT', self.spec['boost'].prefix)
def install_args(self, spec, prefix):
return ["PREFIX={0}".format(prefix)]
@run_after('build')
def fix_perl_scripts(self):
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env perl',
'aggregateBinDepths.pl')
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env perl',
'aggregateContigOverlapsByBin.pl')
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