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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Microbiomeutil(MakefilePackage):
"""Microbiome analysis utilities"""
homepage = "http://microbiomeutil.sourceforge.net/"
url = "https://downloads.sourceforge.net/project/microbiomeutil/microbiomeutil-r20110519.tgz"
version('20110519', '11eaac4b0468c05297ba88ec27bd4b56')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('cdbfasta')
def install(self, spec, prefix):
install_tree('ChimeraSlayer', prefix.ChimeraSlayer)
install_tree('NAST-iEr', join_path(prefix, 'NAST-iEr'))
install_tree('TreeChopper', prefix.TreeChopper)
install_tree('WigeoN', prefix.WigeoN)
install_tree('docs', prefix.docs)
install_tree('RESOURCES', prefix.resources)
install_tree('AmosCmp16Spipeline', prefix.AmosCmp16Spipeline)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PATH', self.prefix.ChimeraSlayer)
run_env.prepend_path('PATH', join_path(self.prefix, 'NAST-iEr'))
run_env.prepend_path('PATH', self.prefix.TreeChopper)
run_env.prepend_path('PATH', self.prefix.WigeoN)
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