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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Minced(Package):
"""MinCED is a program to find Clustered Regularly Interspaced Short
Palindromic Repeats (CRISPRs) in full genomes or environmental datasets
such as metagenomes, in which sequence size can be anywhere from 100 to
800 bp."""
homepage = "https://github.com/ctSkennerton/minced"
url = "https://github.com/ctSkennerton/minced/archive/0.2.0.tar.gz"
license("GPL-3.0-only")
version("0.4.2", sha256="35b6ee22fe6bdc26a31d0203a7dcc6bd1a19fd6733c60d80ceb44431884af165")
version("0.3.2", sha256="334aee43292d0b657c4849f818ddfb3ac7811eb505502bf24a01d66719084b44")
version("0.2.0", sha256="e1ca61e0307e6a2a2480bc0a1291a2c677110f34c3247d4773fdba7e95a6b573")
version("0.1.6", sha256="035e343591b4595c571e17b0b3f526a01a23c3a47ebafb66f20ba667b29b3ed7")
depends_on("java", type=("build", "run"))
def install(self, spec, prefix):
make()
mkdirp(prefix.bin)
install("minced", prefix.bin)
install("minced.jar", prefix.bin)
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