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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Minimap2(PythonPackage):
"""Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database.
Mappy provides a convenient interface to minimap2."""
homepage = "https://github.com/lh3/minimap2"
url = "https://github.com/lh3/minimap2/releases/download/v2.2/minimap2-2.2.tar.bz2"
version('2.14', sha256='9088b785bb0c33488ca3a27c8994648ce21a8be54cb117f5ecee26343facd03b')
version('2.10', sha256='52b36f726ec00bfca4a2ffc23036d1a2b5f96f0aae5a92fd826be6680c481c20')
version('2.2', sha256='7e8683aa74c4454a8cfe3821f405c4439082e24c152b4b834fdb56a117ecaed9')
conflicts('target=aarch64:', when='@:2.10')
depends_on('zlib', type='link')
depends_on('py-cython', type='build')
@run_after('install')
def install_minimap2(self):
make_arg = []
if self.spec.target.family == 'aarch64':
make_arg.extend([
'arm_neon=1',
'aarch64~1'
])
make(*make_arg)
mkdirp(prefix.bin)
install('minimap2', prefix.bin)
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