blob: ebc2ca45e77153eb0e8eeef1707062439fa56a0b (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from spack.pkg.builtin.boost import Boost
class Mira(AutotoolsPackage):
"""MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome
and EST/RNASeq projects."""
homepage = "https://sourceforge.net/projects/mira-assembler/"
url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2"
version('4.0.2', sha256='a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80')
depends_on('boost@1.46:')
# TODO: replace this with an explicit list of components of Boost,
# for instance depends_on('boost +filesystem')
# See https://github.com/spack/spack/pull/22303 for reference
depends_on(Boost.with_default_variants)
depends_on('expat@2.0.1:')
depends_on('gperftools')
conflicts('%gcc@6:', when='@:4.0.2')
def patch(self):
with working_dir(join_path('src', 'progs')):
edit = FileFilter('quirks.C')
edit.filter('#include <boost/filesystem.hpp>',
'#include <boost/filesystem.hpp>\n#include <iostream>')
def configure_args(self):
args = ['--with-boost=%s' % self.spec['boost'].prefix,
'--with-expat=%s' % self.spec['expat'].prefix]
return args
|
