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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mira(AutotoolsPackage):
"""MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome
and EST/RNASeq projects."""
homepage = "http://sourceforge.net/projects/mira-assembler/"
url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2"
version('4.0.2', '1921b426910653a34a6dbb37346f28ea')
depends_on('boost@1.46:')
depends_on('expat@2.0.1:')
depends_on('gperftools')
conflicts('%gcc@6:', when='@:4.0.2')
def patch(self):
with working_dir(join_path('src', 'progs')):
edit = FileFilter('quirks.C')
edit.filter('#include <boost/filesystem.hpp>',
'#include <boost/filesystem.hpp>\n#include <iostream>')
def configure_args(self):
args = ['--with-boost=%s' % self.spec['boost'].prefix,
'--with-expat=%s' % self.spec['expat'].prefix]
return args
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