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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Moab(AutotoolsPackage):
"""MOAB is a component for representing and evaluating mesh
data. MOAB can store structured and unstructured mesh, consisting
of elements in the finite element 'zoo.' The functional interface
to MOAB is simple yet powerful, allowing the representation of
many types of metadata commonly found on the mesh. MOAB is
optimized for efficiency in space and time, based on access to
mesh in chunks rather than through individual entities, while also
versatile enough to support individual entity access."""
homepage = "https://bitbucket.org/fathomteam/moab"
git = "https://bitbucket.org/fathomteam/moab.git"
url = "http://ftp.mcs.anl.gov/pub/fathom/moab-5.0.0.tar.gz"
version('develop', branch='develop')
version('master', branch='master')
# Version 5.0.2 disappeared from FTP server. Instead set temporary version
# of MoAB to 5.0.2 set to current head of the master branch.
version('5.0.2', commit='01d05b1805236ef44da36f67eb2701095f2e33c7')
version('5.0.1', commit='6cc12bd4ae3fa7c9ad81c595e4d38fa84f0884be')
version('5.0.0', sha256='df5d5eb8c0d0dbb046de2e60aa611f276cbf007c9226c44a24ed19c570244e64')
version('4.9.2', sha256='26611b8cc24f6b7df52eb4ecbd31523d61523da0524b5a2d066a7656e2e82ac5')
version('4.9.1', sha256='b26cee46c096157323cafe047ad58616e16ebdb1e06caf6878673817cb4410cf')
version('4.9.0', sha256='267a7c05da847e4ea856db2c649a5484fb7bdc132ab56721ca50ee69a7389f4d')
version('4.8.2', sha256='b105cff42930058dc14eabb9a25e979df7289b175732fe319d2494e83e09e968')
variant('mpi', default=True, description='enable mpi support')
variant('hdf5', default=True,
description='Required to enable the hdf5 (default I/O) format')
variant('netcdf', default=False,
description='Required to enable the ExodusII reader/writer.')
variant('pnetcdf', default=False,
description='Enable pnetcdf (AKA parallel-netcdf) support')
variant('netcdf', default=False,
description='Required to enable the ExodusII reader/writer.')
variant('zoltan', default=False, description='Enable zoltan support')
variant('cgm', default=False, description='Enable common geometric module')
variant('metis', default=True, description='Enable metis link')
variant('parmetis', default=True, description='Enable parmetis link')
variant('irel', default=False, description='Enable irel interface')
variant('fbigeom', default=False, description='Enable fbigeom interface')
variant('coupler', default=True, description='Enable mbcoupler tool')
variant('dagmc', default=False, description='Enable dagmc tool')
variant("debug", default=False, description='enable debug symbols')
variant('shared', default=False,
description='Enables the build of shared libraries')
variant('fortran', default=True, description='Enable Fortran support')
conflicts('+irel', when='~cgm')
conflicts('+pnetcdf', when='~mpi')
conflicts('+parmetis', when='~mpi')
conflicts('+coupler', when='~mpi')
# There are many possible variants for MOAB. Here are examples for
# two of them:
#
# variant('vtk', default=False, description='Enable VTK support')
# variant('cgns', default=False, description='Enable CGNS support')
# depends_on('cgns', when='+cgns')
# depends_on('vtk', when='+vtk')
depends_on('autoconf', type='build', when='@master,5.0.1:')
depends_on('automake', type='build', when='@master,5.0.1:')
depends_on('libtool', type='build', when='@master,5.0.1:')
depends_on('m4', type='build', when='@master,5.0.1:')
depends_on('blas')
depends_on('lapack')
depends_on('mpi', when='+mpi')
depends_on('hdf5', when='+hdf5')
depends_on('hdf5+mpi', when='+hdf5+mpi')
depends_on('netcdf', when='+netcdf')
depends_on('parallel-netcdf', when='+pnetcdf')
depends_on('cgm', when='+cgm')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
# FIXME it seems that zoltan needs to be built without fortran
depends_on('zoltan~fortran', when='+zoltan')
patch('tools-492.patch', when='@4.9.2')
def configure_args(self):
spec = self.spec
options = [
'--enable-optimize',
'--disable-vtkMOABReader',
'--disable-mbtagprop',
'--disable-mbmem',
'--disable-spheredecomp',
'--disable-mbsurfplot',
'--disable-gsets',
'--disable-mcnpmit',
'--disable-refiner',
'--disable-h5mtools',
'--disable-mbcslam',
'--with-pic',
'--without-vtk'
]
if '+mpi' in spec:
options.extend([
'--with-mpi=%s' % spec['mpi'].prefix,
'CXX=%s' % spec['mpi'].mpicxx,
'CC=%s' % spec['mpi'].mpicc,
'FC=%s' % spec['mpi'].mpifc
])
if '+parmetis' in spec:
options.append('--with-parmetis=%s' % spec['parmetis'].prefix)
else:
options.append('--without-parmetis')
# FIXME: --without-mpi does not configure right
# else:
# options.append('--without-mpi')
options.append('--with-blas=%s' % spec['blas'].libs.ld_flags)
options.append('--with-lapack=%s' % spec['lapack'].libs.ld_flags)
if '+hdf5' in spec:
options.append('--with-hdf5=%s' % spec['hdf5'].prefix)
else:
options.append('--without-hdf5')
if '+netcdf' in spec:
options.append('--with-netcdf=%s' % spec['netcdf'].prefix)
else:
options.append('--without-netcdf')
if '+pnetcdf' in spec:
options.append('--with-pnetcdf=%s'
% spec['parallel-netcdf'].prefix)
else:
options.append('--without-pnetcdf')
if '+cgm' in spec:
options.append('--with-cgm=%s' % spec['cgm'].prefix)
if '+irel' in spec:
options.append('--enable-irel')
else:
options.append('--disable-irel')
else:
options.append('--without-cgm')
if '+fbigeom' in spec:
options.append('--enable-fbigeom')
else:
options.append('--disable-fbigeom')
if '+coupler' in spec:
options.append('--enable-mbcoupler')
else:
options.append('--disable-mbcoupler')
if '+dagmc' in spec:
options.append('--enable-dagmc')
else:
options.append('--disable-dagmc')
if '+metis' in spec:
options.append('--with-metis=%s' % spec['metis'].prefix)
else:
options.append('--without-metis')
if '+parmetis' in spec:
options.append('--with-parmetis=%s' % spec['parmetis'].prefix)
else:
options.append('--without-parmetis')
if '+zoltan' in spec:
options.append('--with-zoltan=%s' % spec['zoltan'].prefix)
else:
options.append('--without-zoltan')
if '+debug' in spec:
options.append('--enable-debug')
else:
options.append('--disable-debug')
# FIXME it seems that with cgm and shared, we have a link
# issue in tools/geometry
if '+shared' in spec:
options.append('--enable-shared')
else:
options.append('--disable-shared')
if '~fortran' in spec:
options.append('--disable-fortran')
else:
options.append('--enable-fortran')
return options
# FIXME Run the install phase with -j 1. There seems to be a problem with
# parallel installations of examples
def install(self, spec, prefix):
make('install', parallel=False)
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