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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mpest(MakefilePackage):
"""MP-EST estimates species trees from a set of gene trees by maximizing
a pseudo-likelihood function."""
homepage = "http://faculty.franklin.uga.edu/lliu/content/mp-est"
url = "https://faculty.franklin.uga.edu/lliu/sites/faculty.franklin.uga.edu.lliu/files/mpest_1.5.zip"
version('1.5', sha256='536895120fc34b19b0740c7fef6467b74c284ae4f1f29c9f5fc5c633f30e4916')
@property
def build_directory(self):
return join_path('mpest_{0}'.format(self.version), 'src')
def install(self, spec, prefix):
with working_dir(self.build_directory):
mkdirp(prefix.bin)
install('mpest', prefix.bin)
def setup_environment(self, spack_env, run_env):
if self.spec.satisfies('platform=darwin'):
spack_env.set('ARCHITECTURE', 'mac')
else:
spack_env.set('ARCHITECTURE', 'unix')
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