1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Mrtrix3(Package):
"""MRtrix provides a set of tools to perform various advanced diffusion MRI
analyses, including constrained spherical deconvolution (CSD),
probabilistic tractography, track-density imaging, and apparent fibre
density."""
homepage = "https://www.mrtrix.org/"
url = "https://github.com/MRtrix3/mrtrix3/archive/refs/tags/3.0.3.tar.gz"
git = "https://github.com/MRtrix3/mrtrix3.git"
license("MPL-2.0")
version(
"3.0.4",
sha256="f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a",
preferred=True,
)
version("3.0.3", sha256="6ec7d5a567d8d7338e85575a74565189a26ec8971cbe8fb24a49befbc446542e")
version("2017-09-25", commit="72aca89e3d38c9d9e0c47104d0fb5bd2cbdb536d")
depends_on("python@2.7:", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("glu")
depends_on("qt+opengl@4.7:")
# MRTrix <= 3.0.3 can't build with eigen >= 3.4 due to conflicting declarations
depends_on("eigen@3.3", when="@3.0.3")
depends_on("eigen@3.4:", when="@3.0.4:")
depends_on("zlib-api")
depends_on("libtiff")
depends_on("fftw")
patch("fix_includes.patch", when="@3.0.3:3.0.4")
conflicts("%gcc@7:", when="@2017-09-25") # MRtrix3/mrtrix3#1041
def install(self, spec, prefix):
configure = Executable("./configure")
build = Executable("./build")
configure()
build()
install_tree(".", prefix)
def setup_run_environment(self, env):
env.prepend_path("PATH", self.prefix)
|
