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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Muscle(MakefilePackage):
"""MUSCLE is one of the best-performing multiple alignment programs
according to published benchmark tests, with accuracy and speed
that are consistently better than CLUSTALW."""
homepage = "https://drive5.com/muscle/"
version("3.8.31", sha256="43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad")
version("3.8.1551", sha256="c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e")
@property
def build_directory(self):
if self.spec.satisfies("@3.8.31"):
return "src"
else:
return "."
def url_for_version(self, version):
fmt_new = "https://drive5.com/muscle/downloads{0}/muscle{0}_src.tar.gz"
fmt_old = "https://drive5.com/muscle/muscle_src_{0}.tar.gz"
if version == Version("3.8.31"):
return fmt_new.format(version.dotted)
else:
return fmt_old.format(version.dotted)
def edit(self, spec, prefix):
mkfile_name = "Makefile"
if self.spec.satisfies("@3.8.31"):
mkfile_name = "mk"
makefile = FileFilter(join_path(self.build_directory, mkfile_name))
makefile.filter("-static", "")
makefile.filter("-funroll-loops", "")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install(join_path(self.build_directory, "muscle"), prefix.bin)
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