blob: fca9afd2ee70d551e4818c9be557768727f52b95 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Nextdenovo(MakefilePackage):
"""NextDenovo is a string graph-based de novo assembler for long reads."""
homepage = "https://nextdenovo.readthedocs.io/en/latest/index.html"
url = "https://github.com/Nextomics/NextDenovo/archive/refs/tags/2.5.2.tar.gz"
license("GPL-3.0-only")
version("2.5.2", sha256="f1d07c9c362d850fd737c41e5b5be9d137b1ef3f1aec369dc73c637790611190")
depends_on("python", type="run")
depends_on("py-paralleltask", type="run")
def edit(self, spec, prefix):
makefile = FileFilter("Makefile")
makefile.filter(r"^TOP_DIR.*", "TOP_DIR={0}".format(self.build_directory))
runfile = FileFilter("nextDenovo")
runfile.filter(r"^SCRIPT_PATH.*", "SCRIPT_PATH = '{0}'".format(prefix))
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
install("nextDenovo", prefix.bin)
install_tree("lib", prefix.lib)
|
