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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Orthomcl(Package):
"""OrthoMCL is a genome-scale algorithm for grouping orthologous protein
sequences."""
homepage = "https://orthomcl.org/orthomcl/"
url = "http://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz"
version('2.0.9', sha256='5f96d23ff255778535c4926d75b19f059db0c01be1ac599289d2431115d68640')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('mcl')
depends_on('mariadb')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('config', prefix.config)
install_tree('doc', prefix.doc)
install_tree('lib', prefix.lib)
def setup_run_environment(self, env):
env.prepend_path('PERL5LIB', self.prefix.lib)
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