blob: b3d7e1f6fc53a25a16f331d04315a43b878578e0 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PacbioDaligner(MakefilePackage):
"""Daligner: The Dazzler "Overlap" Module. This is a special fork
required for some pacbio utilities."""
homepage = "https://github.com/PacificBiosciences/DALIGNER"
git = "https://github.com/PacificBiosciences/DALIGNER.git"
version("2017-08-05", commit="0fe5240d2cc6b55bf9e04465b700b76110749c9d")
depends_on("gmake", type="build")
depends_on("pacbio-dazz-db")
def edit(self, spec, prefix):
mkdir(prefix.bin)
makefile = FileFilter("Makefile")
makefile.filter(r"DEST_DIR\s*=\s*~/bin", "DEST_DIR = " + prefix.bin)
gmf = FileFilter("GNUmakefile")
gmf.filter(r"rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin", "cp ${ALL} " + prefix.bin)
|
