1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Pandaseq(AutotoolsPackage):
"""PANDASEQ is a program to align Illumina reads, optionally with PCR
primers embedded in the sequence, and reconstruct an overlapping
sequence."""
homepage = "https://github.com/neufeld/pandaseq"
url = "https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz"
version('2.11', sha256='6e3e35d88c95f57d612d559e093656404c1d48c341a8baa6bef7bb0f09fc8f82')
version('2.10', sha256='93cd34fc26a7357e14e386b9c9ba9b28361cf4da7cf62562dc8501e220f9a561')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type=('build', 'link'))
depends_on('m4', type='build')
depends_on('zlib', type='build')
depends_on('pkgconfig', type='build')
depends_on('bzip2', type='link')
def autoreconf(self, spec, prefix):
bash = which('bash')
bash('./autogen.sh')
|
