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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Pandaseq(AutotoolsPackage):
"""PANDASEQ is a program to align Illumina reads, optionally with PCR
primers embedded in the sequence, and reconstruct an overlapping
sequence."""
homepage = "https://github.com/neufeld/pandaseq"
url = "https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz"
version('2.11', 'a8ae0e938bac592fc07dfa668147d80b')
version('2.10', '5b5b04c9b693a999f10a9c9bd643f068')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type=('build', 'link'))
depends_on('m4', type='build')
depends_on('zlib', type='build')
depends_on('pkgconfig', type='build')
depends_on('bzip2', type='link')
def autoreconf(self, spec, prefix):
bash = which('bash')
bash('./autogen.sh')
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