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path: root/var/spack/repos/builtin/packages/parsimonator/nox86.patch
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diff -ruN spack-src/axml.c spack-src.new/axml.c
--- spack-src/axml.c	2019-07-30 11:00:46.000000000 +0900
+++ spack-src.new/axml.c	2019-07-30 13:13:39.345602753 +0900
@@ -48,7 +48,7 @@
 
 
 
-#if ! (defined(__ppc) || defined(__powerpc__) || defined(PPC))
+#if defined(x86_64)
 #include <xmmintrin.h>
 
 #endif
diff -ruN spack-src/Makefile.nosse spack-src.new/Makefile.nosse
--- spack-src/Makefile.nosse	1970-01-01 09:00:00.000000000 +0900
+++ spack-src.new/Makefile.nosse	2019-07-30 14:07:03.385661664 +0900
@@ -0,0 +1,33 @@
+# Makefile June 2011 by Alexandros Stamatakis
+
+# to compile OPENMP version use INTEL icc !
+
+CC = gcc 
+#icc
+
+
+CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 #-Wall -pedantic -Wunused-parameter -Wredundant-decls  -Wreturn-type  -Wswitch-default -Wunused-value -Wimplicit  -Wimplicit-function-declaration  -Wimplicit-int -Wimport  -Wunused  -Wunused-function  -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast  -Wmissing-declarations -Wmissing-prototypes  -Wnested-externs  -Wold-style-definition -Wstrict-prototypes  -Wdeclaration-after-statement -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value  -Wunused-variable -Wformat  -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast
+
+LIBRARIES = -lm
+
+#Intel OPENMP flag for linking and compiling: -openmp 
+
+RM = rm -f
+
+objs    = axml.o  fastDNAparsimony.o
+
+
+all : raxmlHPC
+
+GLOBAL_DEPS = axml.h
+
+raxmlHPC : $(objs)
+	$(CC) -o parsimonator $(objs) $(LIBRARIES) 
+
+
+axml.o : axml.c $(GLOBAL_DEPS)
+fastDNAparsimony.o : fastDNAparsimony.c  $(GLOBAL_DEPS)
+
+
+clean : 
+	$(RM) *.o parsimonator