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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Pbbam(MesonPackage):
"""The pbbam software package provides components to create, query,
& edit PacBio BAM files and associated indices.
These components include a core C++ library,
bindings for additional languages, and command-line utilities."""
homepage = "https://github.com/PacificBiosciences/pbbam"
url = "https://github.com/PacificBiosciences/pbbam/archive/refs/tags/0.18.0.tar.gz"
maintainers("snehring")
version(
"2.1.0",
sha256="605944f09654d964ce12c31d67e6766dfb1513f730ef5d4b74829b2b84dd464f",
url="https://github.com/PacificBiosciences/pbbam/archive/refs/tags/v2.1.0.tar.gz",
)
version("0.18.0", sha256="45286e5f7deb7ff629e0643c8a416155915aec7b85d54c60b5cdc07f4d7b234a")
depends_on("zlib-api")
depends_on("boost@1.55.0:")
depends_on("htslib@1.3.1:")
# newer versions require C17
conflicts("%gcc@:7.5.0", when="@2.1.0:")
conflicts("%clang@:6.0.1", when="@2.1.0:")
def meson_args(self):
options = []
if self.run_tests:
options.append("-Dtests=true")
else:
options.append("-Dtests=false")
return options
def setup_build_environment(self, env):
env.set("BOOST_ROOT", self.spec["boost"].prefix)
def setup_dependent_build_environment(self, env, dependent_spec):
env.set("PacBioBAM_LIBRARIES", self.prefix.lib)
env.set("PacBioBAM_INCLUDE_DIRS", self.prefix.include)
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