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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Phantompeakqualtools(RPackage):
"""This package computes informative enrichment and quality measures for
ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data."""
homepage = "https://github.com/kundajelab/phantompeakqualtools"
url = "https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz"
version("1.2", sha256="86cbcca80b65f150b1cdbea673d8a47caba88c2db6b3b567a80f2c797c9a1668")
depends_on("awk")
depends_on("samtools")
depends_on("r", type=("build", "run"))
depends_on("r-phantompeakqualtools", type=("build", "run"))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("run_spp.R", prefix.bin)
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