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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Phast(MakefilePackage):
"""PHAST is a freely available software package for comparative and
evolutionary genomics."""
homepage = "http://compgen.cshl.edu/phast/index.php"
url = "https://github.com/CshlSiepelLab/phast/archive/v1.4.tar.gz"
version('1.4', '2bc0412ba58ea1f08ba5e12fad43b4c7')
# phast cannot build with clapack using external blas
depends_on('clapack~external-blas')
build_directory = 'src'
@property
def build_targets(self):
targets = ['CLAPACKPATH={0}'.format(self.spec['clapack'].prefix)]
return targets
def edit(self, spec, prefix):
with working_dir(self.build_directory):
filter_file(r'\$\{PWD\}',
'$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
'make-include.mk')
filter_file(r'\$\{PWD\}',
'$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
'Makefile')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('lib', prefix.lib)
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