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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Platypus(Package):
"""A Haplotype-Based Variant Caller For Next Generation Sequence Data"""
homepage = "http://www.well.ox.ac.uk/platypus"
url = "http://www.well.ox.ac.uk/bioinformatics/Software/Platypus-latest.tgz"
version('0.8.1', 'edf3fb5bf080241ddb75a413c8529d57')
depends_on('python@2.6:', type=('build', 'run'))
depends_on('py-cython', type='build')
depends_on('htslib')
def install(self, spec, prefix):
build_platypus = Executable('./buildPlatypus.sh')
build_platypus()
install_tree('.', prefix.bin)
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