1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PpopenApplFdm(MakefilePackage):
"""
ppOpen-APPL/FDM is a application software for the FDM simulation of
seismic wave propagation in elastic media in 2D and 3D.
The 2D application is prepared for a single-CPU (sequential) calculation
and the 3D application use MPI and OpenMP for parallel computing.
"""
homepage = "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/"
git = "https://github.com/Post-Peta-Crest/ppOpenHPC.git"
version('master', branch='APPL/FDM')
# remove unused variable definition
patch('unused.patch')
# remove iargc external definition
# iargc is intrinsic in gfortran
patch('gfortran_iargc.patch', when='%gcc')
# Fixed a problem that 'iargc' was not declared in advance
patch('iargc_definition.patch', when='%fj')
depends_on('ppopen-math-vis', type='link')
depends_on('mpi')
parallel = False
def edit(self, spec, prefix):
makefile_in = FileFilter('Makefile.in')
makefile_in.filter('PREFIX += .*$', 'PREFIX = {0}'.format(prefix))
makefile_in.filter(
'LIBDIR = .*$',
'LIBDIR = {0}'.format(prefix)
)
makefile_in.filter(
'CC += .*$',
'CC = {0}'.format(spec['mpi'].mpicc)
)
makefile_in.filter('COPTFLAGS += .*$', 'COPTFLAGS = -O3')
makefile_in.filter(
'CXX += .*$',
'CXX = {0}'.format(spec['mpi'].mpicxx)
)
makefile_in.filter('CXXOPTFLAGS = .*$', 'CXXOPTFLAGS = -O3')
makefile_in.filter(
'FC += .*$',
'FC = {0}'.format(spec['mpi'].mpifc)
)
makefile_in.filter('FOPTFLAGS += .*$', 'FOPTFLAGS = -O3')
makefile_in.filter(
'F90 += .*$',
'F90 = {0}'.format(spec['mpi'].mpifc)
)
makefile_in.filter('F90OPTFLAGS += .*$', 'F90OPTFLAGS = -O3')
makefile_opt = FileFilter(join_path(
'src', 'seismic_2D', 'makefile.option')
)
makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spack_fc))
makefile_opt.filter('FFLAGS = .*$', 'FFLAGS = -O3')
makefile = FileFilter(join_path(
'src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'Makefile')
)
makefile.filter('LIBS += .*$', 'LIBS = ')
makefile.filter(
'FLDFLAGS += .*$',
'FLDFLAGS = ' + spec['ppopen-math-vis'].libs.ld_flags
)
makefile_opt = FileFilter(join_path(
'src', 'seismic_3D', '3.parallel', 'Makefile.option')
)
makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spec['mpi'].mpifc))
makefile_opt.filter(
'FFLAGS = .*$',
'FFLAGS = -O3 {0}'.format(self.compiler.openmp_flag)
)
copy(
join_path('examples', 'seismic_3D-example', 'm_param.f90'),
join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS')
)
copy(
join_path('examples', 'seismic_3D-example', 'm_param.f90'),
join_path('src', 'seismic_3D', '3.parallel')
)
for makefile in find('tools', 'makefile', recursive=True):
fflags = ['-O3', '-I.']
m = FileFilter(makefile)
m.filter('^FC =.*$', 'FC = {0}'.format(spack_fc))
m.filter(
'^FFLAGS =.*$',
'FFLAGS = {0}'.format(' '.join(fflags))
)
def build(self, spec, prefix):
make('seism2d', 'seism3d-ppohVIS', 'seism3d-parallel')
for d in ['seismic_2D-tools', 'seismic_3D-tools']:
with working_dir(join_path('tools', d)):
make('all')
def install(self, spec, prefix):
commands = [
join_path('src', 'seismic_2D', 'seism2d_psv'),
join_path('src', 'seismic_3D', '3.parallel', 'seism3d3n'),
join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'seism3d3n'),
join_path('tools', 'seismic_2D-tools', 'pmxy2d'),
join_path('tools', 'seismic_2D-tools', 'rwav2d'),
join_path('tools', 'seismic_3D-tools', 'catsnap'),
join_path('tools', 'seismic_3D-tools', 'catwav'),
join_path('tools', 'seismic_3D-tools', 'ppmxy3d3'),
join_path('tools', 'seismic_3D-tools', 'rwav3d'),
]
mkdir(prefix.bin)
for command in commands:
copy(command, prefix.bin)
install_tree('examples', prefix.examples)
install_tree('doc', prefix.doc)
install_tree('src', prefix.src)
copy('Makefile.in', prefix)
clean_dir = [
join_path(prefix.src, 'seismic_2D'),
join_path(prefix.src, 'seismic_3D', '1.ppohFDM-ppohVIS'),
join_path(prefix.src, 'seismic_3D', '3.parallel'),
]
for d in clean_dir:
with working_dir(d):
make('clean')
force_remove(join_path(prefix, 'Makefile.in'))
|
