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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyBiomFormat(PythonPackage):
"""The BIOM file format (canonically pronounced biome) is designed to be
a general-use format for representing biological sample by observation
contingency tables."""
homepage = "https://pypi.python.org/pypi/biom-format/2.1.6"
url = "https://pypi.io/packages/source/b/biom-format/biom-format-2.1.6.tar.gz"
version('2.1.6', sha256='8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d')
variant('h5py', default=True, description='For use with BIOM 2.0+ files')
depends_on('py-setuptools', type=('build', 'run'))
depends_on('py-cython', type='build')
depends_on('py-h5py', type=('build', 'run'), when='+h5py')
depends_on('py-click', type=('build', 'run'))
depends_on('py-numpy@1.3.0:', type=('build', 'run'))
depends_on('py-future@0.16.0:', type=('build', 'run'))
depends_on('py-scipy@0.13.0:', type=('build', 'run'))
depends_on('py-pandas@0.19.2:', type=('build', 'run'))
depends_on('py-six@1.10.0:', type=('build', 'run'))
depends_on('py-pyqi', type=('build', 'run'))
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