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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyCmseq(PythonPackage):
"""CMSeq is a set of commands to provide an interface
to .bam files for coverage and sequence consensus."""
homepage = "https://github.com/SegataLab/cmseq"
pypi = "CMSeq/CMSeq-1.0.4.tar.gz"
license("MIT")
version("1.0.4", sha256="93038a6dba826e29a66df3ec8ab2b3e3872acac7af9df245e4a5a624584aca5c")
depends_on("py-numpy", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-bcbio-gff", type=("build", "run"))
depends_on("samtools@1.2:", type=("build", "run"))
depends_on("py-pysam", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-biopython@:1.76", type=("build", "run"))
depends_on("py-setuptools@:57", type=("build"))
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