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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyDeepsigBiocomp(PythonPackage):
"""DeepSig - Predictor of signal peptides
in proteins based on deep learning"""
homepage = "https://deepsig.biocomp.unibo.it"
url = "https://github.com/BolognaBiocomp/deepsig/archive/refs/tags/v1.2.5.tar.gz"
license("GPL-3.0-only")
version("1.2.5", sha256="e954b815d63c221c564c7d3fe27123d7cd2c39b191d6107369ab095d506496e0")
depends_on("python@3.8", type=("build", "run"))
depends_on("py-setuptools", type="build")
depends_on("py-biopython@1.78:", type=("build", "run"))
depends_on("py-keras@2.4.3", type=("build", "run"))
depends_on("py-tensorflow@2.2.0", type=("build", "run"))
depends_on("py-tensorboard", type=("build", "run"))
@run_after("install")
def create_share_folder(self):
share_dir = join_path(self.prefix, "share", "deepsig")
mkdirp(share_dir)
mv = which("mv")
for d in ("models", "tools"):
mv(d, share_dir)
def setup_run_environment(self, env):
env.set("DEEPSIG_ROOT", self.prefix.share.deepsig)
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