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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from glob import glob
from os import unlink
from spack import *
class PyDpGpCluster(PythonPackage):
"""DP_GP_cluster clusters genes by expression over a time course using a
Dirichlet process Gaussian process model."""
homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster"
git = "https://github.com/PrincetonUniversity/DP_GP_cluster.git"
version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4')
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-cython', type='build')
depends_on('py-gpy@0.8.8:0.9.9', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-scipy@0.14:', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-scikit-learn', type=('build', 'run'))
@run_before('build')
def remove_cython_output(self):
for f in glob('DP_GP/*.c'):
unlink(f)
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