1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyFastfold(PythonPackage):
"""Optimizing Protein Structure Prediction Model Training and Inference on
GPU Clusters."""
homepage = "https://github.com/hpcaitech/FastFold"
url = "https://github.com/hpcaitech/FastFold/archive/refs/tags/0.2.0.tar.gz"
maintainers("meyersbs")
version("0.2.0", sha256="6760dbae9809b8b26219c9477489d34325807be504098901d0375fbdc3103f88")
# From README:
depends_on("python@3.8:", type=("build", "run")) # Req Relaxed (was @3.8:3.9)
depends_on("cuda@11.1:", type=("build", "run"))
depends_on("py-torch@1.10:+cuda", type=("build", "run"))
# From setup.py:
depends_on("py-setuptools", type="build")
depends_on("py-einops", type=("build", "run"))
depends_on("py-colossalai", type=("build", "run"))
# From environment.yml (to appease import errors):
depends_on("py-scipy@1.7.1:", type=("build", "run")) # Req relaxed (was @1.7.1)
depends_on("py-dm-tree@0.1.6:", type=("build", "run")) # Req relaxed (was @0.1.6)
depends_on("py-biopython@1.79:", type=("build", "run")) # Req relaxed (was @1.79)
depends_on("py-ml-collections@0.1.0:", type=("build", "run")) # Req relaxed (was @0.1.0)
depends_on("py-ray@2.0.0:", type=("build", "run")) # Req relaxed (was @2.0.0)
depends_on("py-pandas", type=("build", "run"))
depends_on("openmm@7.7.0:+cuda", type=("build", "run"))
depends_on("py-requests@2.26.0:", type=("build", "run")) # Req relaxed (was @2.26.0)
# From import errors:
depends_on("py-setproctitle", type=("build", "run"))
depends_on("py-pdbfixer", type=("build", "run"))
depends_on("py-pytorch-lightning", type=("build", "run"))
# py-fastfold uses np.int, which was removed in py-numpy@1.24.0
depends_on("py-numpy@:1.23", when="@0.2.0", type=("build", "run"))
|
