var/spack/repos/builtin/packages/py-metasv/package.py


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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class PyMetasv(PythonPackage):
    """An accurate and integrative structural-variant caller for next
       generation sequencing"""

    homepage = "http://bioinform.github.io/metasv/"
    url      = "https://github.com/bioinform/metasv/archive/0.5.4.tar.gz"

    version('0.5.4', sha256='c8613b56f44b9303b9e126618b2aee9dbc0b26c03d14e70e1aeed918582eeec1')

    depends_on('py-pybedtools@0.6.9', type=('build', 'run'))
    depends_on('py-pysam', type=('build', 'run'))
    depends_on('py-pyvcf', type=('build', 'run'))
    depends_on('py-setuptools', type='build')