1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyPhylophlan(PythonPackage):
"""PhyloPhlAn 3.0 is an integrated pipeline for large-scale
phylogenetic profiling of genomes and metagenomes."""
homepage = "https://github.com/biobakery/phylophlan"
url = "https://github.com/biobakery/phylophlan/archive/refs/tags/3.0.3.tar.gz"
license("MIT")
version("3.0.3", sha256="d8d0082c95d58d7b11a60c1e2214b35c1a23a65675005f1393e7647d76c6a054")
version("3.0.2", sha256="c342116662bbfbb49f0665291fc7c0be5a0d04a02a7be2da81de0322eb2256b4")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-setuptools", type="build")
depends_on("py-biopython@1.73:", type=("build", "run"))
depends_on("py-dendropy@4.4.0:", type=("build", "run"))
depends_on("py-matplotlib@3.1.0:", type=("build", "run"))
depends_on("py-numpy@1.15.4:", type=("build", "run"))
depends_on("py-pandas@0.24.2:", type=("build", "run"))
depends_on("py-seaborn@0.9.0:", type=("build", "run"))
depends_on("blast-plus@2.6.0:", type=("build", "run"))
depends_on("diamond@0.9:", type=("build", "run"))
depends_on("trimal@1.4.1:", type=("build", "run"))
depends_on("muscle@3.8.1551:", type=("build", "run"))
depends_on("mafft@7.310:", type=("build", "run"))
depends_on("fasttree@2.1.8:", type=("build", "run"))
depends_on("raxml@8.2.10:", type=("build", "run"))
depends_on("iqtree2", type=("build", "run"))
depends_on("mash", type=("build", "run"))
|
