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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyPyani(PythonPackage):
"""pyani is a Python3 module that provides support for calculating
average nucleotide identity (ANI) and related measures for whole genome
comparisons, and rendering relevant graphical summary output. Where
available, it takes advantage of multicore systems, and can integrate
with SGE/OGE-type job schedulers for the sequence comparisons."""
homepage = "https://widdowquinn.github.io/pyani"
pypi = "pyani/pyani-0.2.7.tar.gz"
license("MIT")
version("0.2.7", sha256="dbc6c71c46fbbfeced3f8237b84474221268b51170caf044bec8559987a7deb9")
version("0.2.6", sha256="e9d899bccfefaabe7bfa17d48eef9c713d321d2d15465f7328c8984807c3dd8d")
depends_on("python@3.5:")
depends_on("py-setuptools", type="build")
depends_on("py-matplotlib", type=("build", "run"))
depends_on("py-seaborn", type=("build", "run"))
# Required for ANI analysis
depends_on("py-biopython", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
# Required for ANIb analysis
depends_on("blast-plus~python", type="run")
# Required for ANIm analysis
depends_on("mummer", type="run")
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