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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyPycortex(PythonPackage):
"""Python Cortical mapping software for fMRI data."""
# When pycortex is started it creates a user config file (on linux located
# in ~/.config/pycortex) which can be problematic when reinstalling a newer
# version with spack due to hardscoded absolute paths of the pycortex module
homepage = "https://github.com/gallantlab/pycortex"
pypi = "pycortex/pycortex-1.2.2.tar.gz"
license("BSD-2-Clause")
version("1.2.2", sha256="ac46ed6a1dc727c3126c2b5d7916fc0ac21a6510c32a5edcd3b8cfb7b2128414")
depends_on("py-setuptools", type="build")
depends_on("py-cython", type="build")
depends_on("py-future", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-tornado@4.3:", type=("build", "run"))
depends_on("py-shapely", type=("build", "run"))
depends_on("py-lxml", type=("build", "run"))
depends_on("py-html5lib", type=("build", "run"))
depends_on("py-h5py", type=("build", "run"))
depends_on("py-numexpr", type=("build", "run"))
depends_on("py-cython", type=("build", "run")) # is in install_requires
depends_on("py-matplotlib", type=("build", "run"))
depends_on("pil", type=("build", "run"))
depends_on("py-nibabel", type=("build", "run"))
depends_on("py-networkx@2.1:", type=("build", "run"))
depends_on("py-imageio", type=("build", "run"))
depends_on("py-wget", type=("build", "run"))
# inkscape is not in spack
# TODO remove this patch and add inkscape dependency once it is in
def patch(self):
# remove inkscape dependency
filter_file(
"from .testing_utils import INKSCAPE_VERSION", "", "cortex/utils.py", string=True
)
filter_file("open_inkscape=True", "open_inkscape=False", "cortex/utils.py", string=True)
filter_file(
"from .testing_utils import INKSCAPE_VERSION",
"INKSCAPE_VERSION = None",
"cortex/svgoverlay.py",
string=True,
)
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