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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyTesorter(PythonPackage):
"""
TEsorter is coded for LTR_retriever to classify long terminal repeat
retrotransposons (LTR-RTs) at first. It can also be used to
classify any other transposable elements (TEs), including
Class I and Class II elements which are covered by the
REXdb database.
"""
homepage = "https://github.com/zhangrengang/TEsorter"
url = "https://github.com/zhangrengang/TEsorter/archive/refs/tags/v1.4.6.tar.gz"
maintainers("snehring")
license("GPL-3.0-or-later")
version("1.4.6", sha256="c6952c98fa78d0084742fd6c7d2d1204d36db103c3cbeb19e52093cd9d311523")
depends_on("py-biopython", type=("build", "run"))
depends_on("py-xopen", type=("build", "run"))
depends_on("hmmer@3.3:", type="run")
depends_on("blast-plus", type="run")
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