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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyTetoolkit(PythonPackage):
"""TEToolkit is a software package that utilizes both unambiguously
(uniquely) and ambiguously (multi-) mapped reads to perform
differential enrichment analyses from high throughput sequencing
experiments."""
homepage = "http://hammelllab.labsites.cshl.edu/software"
pypi = "TEToolkit/TEToolkit-1.5.1.tar.gz"
license("GPL-3.0-only")
version("2.0.3", sha256="1d0f5928b30c6cd9dbef8e092ae0c11e9e707faf92a19af8eed3e360da7d4e46")
version("1.5.1", sha256="22c13ca45bccc89e9d9bf48d59ae6db1fa4c634def64fc56ba9bffd23aa689ac")
depends_on("py-setuptools")
depends_on("python@2.7:", type=("build", "run"))
depends_on("py-pysam", type=("build", "run"))
depends_on("r-deseq", when="@:1.5.1", type=("build", "run"))
depends_on("r-deseq2", when="@2.0.0:", type=("build", "run"))
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