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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyVcfKit(PythonPackage):
"""VCF-kit is a command-line based collection of utilities for performing
analysis on Variant Call Format (VCF) files."""
homepage = "https://github.com/AndersenLab/VCF-kit"
url = "https://github.com/AndersenLab/VCF-kit/archive/0.1.6.tar.gz"
version('0.1.6', sha256='4865414ac9dc6996c0baeefadf1d528c28e6d0c3cc3dbdc28a2cdc6e06212428')
depends_on('python', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-awesome-slugify', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-cython@0.24.1:', type='build')
depends_on('py-cyvcf2@0.6.5:', type=('build', 'run'))
depends_on('py-docopt', type=('build', 'run'))
depends_on('py-biopython', type=('build', 'run'))
depends_on('py-yahmm@1.1.2', type=('build', 'run'))
depends_on('py-clint', type=('build', 'run'))
depends_on('py-requests', type=('build', 'run'))
depends_on('py-networkx@1.11', type=('build', 'run'))
depends_on('py-intervaltree@2.1.0', type=('build', 'run'))
depends_on('py-tabulate', type=('build', 'run'))
depends_on('py-jinja2', type=('build', 'run'))
depends_on('bwa@0.7.12:', type='run')
depends_on('samtools@1.3:', type='run')
depends_on('bcftools@1.3:', type='run')
depends_on('blast-plus@2.2.31:', type='run')
depends_on('muscle@3.8.31:', type='run')
depends_on('primer3', type='run')
depends_on('vcftools', type='run')
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