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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Qualimap(Package):
"""Qualimap 2 is a platform-independent application written in Java
and R that provides both a Graphical User Inteface (GUI) and a
command-line interface to facilitate the quality control of alignment
sequencing data and its derivatives like feature counts."""
homepage = "http://qualimap.conesalab.org/"
url = "https://bitbucket.org/kokonech/qualimap/downloads/qualimap_v2.2.1.zip"
license("GPL-2.0-or-later")
version("2.2.1", sha256="08f1d66e49c83c76c56c4225c53aee44f41e0592c8bdc84b8c4ecd975700e045")
depends_on("java", type="run")
def setup_run_environment(self, env):
env.prepend_path("PATH", prefix)
def install(self, spec, prefix):
install_tree(".", prefix)
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