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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAbsseq(RPackage):
"""ABSSeq: a new RNA-Seq analysis method based on modelling absolute
expression differences.
Inferring differential expression genes by absolute counts difference
between two groups, utilizing Negative binomial distribution and
moderating fold-change according to heterogeneity of dispersion across
expression level."""
homepage = "https://bioconductor.org/packages/ABSSeq"
git = "https://git.bioconductor.org/packages/ABSSeq.git"
version('1.38.0', commit='b686d92f0f0efdb835982efe761d059bc24b34ce')
version('1.36.0', commit='bd419072432cba4ef58b4b37b3c69c85d78b1c4a')
version('1.34.1', commit='0c3a2514ef644c6e0de3714bc91959a302c9e006')
version('1.32.3', commit='189d81c3d70f957bf50780f76a6ddcee499b4784')
version('1.22.8', commit='a67ba49bc156a4522092519644f3ec83d58ebd6a')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
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