1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAdegenet(RPackage):
"""Toolset for the exploration of genetic and genomic data. Adegenet
provides formal (S4) classes for storing and handling various genetic
data, including genetic markers with varying ploidy and hierarchical
population structure ('genind' class), alleles counts by populations
('genpop'), and genome-wide SNP data ('genlight'). It also implements
original multivariate methods (DAPC, sPCA), graphics, statistical tests,
simulation tools, distance and similarity measures, and several spatial
methods. A range of both empirical and simulated datasets is also provided
to illustrate various methods."""
homepage = "https://github.com/thibautjombart/adegenet/wiki"
url = "https://cloud.r-project.org/src/contrib/adegenet_2.0.1.tar.gz"
list_url = "https://cloud.r-project.org/src/contrib/Archive/adegenet"
version('2.1.1', sha256='3043fe5d731a38ff0e266f090dcda448640c3d0fd61934c76da32d082e5dce7a')
version('2.1.0', sha256='7ee44061002b41164bbc09256307ab02e536f4f2ac03f36c7dc8f85f6af4639a')
version('2.0.1', sha256='7eddf46e64f680d54d034b68c50900d9bd5bc2e08309d062e230121b7460bb10')
depends_on('r@2.14:', type=('build', 'run'))
depends_on('r-ade4', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-igraph', type=('build', 'run'))
depends_on('r-ape', type=('build', 'run'))
depends_on('r-shiny', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-seqinr', type=('build', 'run'))
depends_on('r-spdep', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-dplyr@0.4.1:', type=('build', 'run'))
depends_on('r-vegan', type=('build', 'run'))
depends_on('r-boot', type=('build', 'run'))
|
