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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAnaquin(RPackage):
"""The project is intended to support the use of sequins
(synthetic sequencing spike-in controls) owned and made available
by the Garvan Institute of Medical Research. The goal is to
provide a standard open source library for quantitative analysis,
modelling and visualization of spike-in controls."""
homepage = "https://www.bioconductor.org/packages/Anaquin/"
git = "https://git.bioconductor.org/packages/Anaquin.git"
version('1.2.0', commit='584d1970cc9dc1d354f9a6d7c1306bd7e8567119')
depends_on('r@3.4.0:3.4.9', when='@1.2.0')
depends_on('r-deseq2', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-qvalue', type=('build', 'run'))
depends_on('r-knitr', type=('build', 'run'))
depends_on('r-rocr', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
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