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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RBio3d(RPackage):
"""Biological Structure Analysis.
Utilities to process, organize and explore protein structure, sequence and
dynamics data. Features include the ability to read and write structure,
sequence and dynamic trajectory data, perform sequence and structure
database searches, data summaries, atom selection, alignment,
superposition, rigid core identification, clustering, torsion analysis,
distance matrix analysis, structure and sequence conservation analysis,
normal mode analysis, principal component analysis of heterogeneous
structure data, and correlation network analysis from normal mode and
molecular dynamics data. In addition, various utility functions are
provided to enable the statistical and graphical power of the R environment
to work with biological sequence and structural data. Please refer to the
URLs below for more information."""
cran = "bio3d"
license("GPL-2.0-or-later")
version("2.4-4", sha256="5654eac10d33e4235ef89292e3b99006d8812b6bfaaa3d6fb540312160fd9de9")
version("2.4-3", sha256="c6031f0d9033260a938171d0fa70720962e352935eb7bd2ddb9b92b93abe6a74")
version("2.4-2", sha256="91415766cda0f96557e6bc568dbce8d44254a9460f2e2d0beed0ce14ffad6ccb")
version("2.4-1", sha256="679fbd87fe9fb82a65427d281d3b68906509e411270cd87d2deb95d404333c1f")
version("2.3-4", sha256="f9b39ab242cbedafcd98c1732cb1f5c0dd9ef66e28be39695e3420dd93e2bafe")
depends_on("r@3.1.0:", type=("build", "run"))
depends_on("r-rcpp", type=("build", "run"))
depends_on("zlib-api")
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