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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RBiostrings(RPackage):
"""Efficient manipulation of biological strings.
Memory efficient string containers, string matching algorithms, and
other utilities, for fast manipulation of large biological sequences or
sets of sequences."""
bioc = "Biostrings"
version('2.64.0', commit='c7ad3c7af607bc8fe4a5e1c37f09e6c9bf70b4f6')
version('2.62.0', commit='53ed287e03d16fa523789af3131c60375ccf587f')
version('2.58.0', commit='0ec1a5455d5e9eebd14b26228906bb04e2abb197')
version('2.52.0', commit='b78fe7c1f3cdbbb7affb1ca7164fe5a1f8b868f5')
version('2.50.2', commit='025e734641a93f6c5d44243297cb4264ea0e34a2')
version('2.48.0', commit='aa3599a7d259d658014d087b86d71ab1deb5f12b')
version('2.46.0', commit='3bf6978c155498b50607d1bb471d1687d185a0fa')
version('2.44.2', commit='e4a2b320fb21c5cab3ece7b3c6fecaedfb1e5200')
depends_on('r@2.8.0:', type=('build', 'run'))
depends_on('r@3.5.0:', type=('build', 'run'), when='@2.50.2:')
depends_on('r@4.0.0:', type=('build', 'run'), when='@2.62.0:')
# Older versions do not build with r@4.2:
depends_on('r@:4.1', type=('build', 'run'), when='@:2.62.0')
depends_on('r-biocgenerics@0.15.6:', type=('build', 'run'))
depends_on('r-biocgenerics@0.31.5:', type=('build', 'run'), when='@2.58.0:')
depends_on('r-biocgenerics@0.37.0:', type=('build', 'run'), when='@2.62.0:')
depends_on('r-s4vectors@0.13.13:', type=('build', 'run'))
depends_on('r-s4vectors@0.17.25:', type=('build', 'run'), when='@2.48.0:')
depends_on('r-s4vectors@0.21.13:', type=('build', 'run'), when='@2.52.0:')
depends_on('r-s4vectors@0.27.12:', type=('build', 'run'), when='@2.58.0:')
depends_on('r-iranges@2.9.18:', type=('build', 'run'), when='@2.44.2:')
depends_on('r-iranges@2.13.24:', type=('build', 'run'), when='@2.48.0:')
depends_on('r-iranges@2.23.9:', type=('build', 'run'), when='@2.58.0:')
depends_on('r-xvector@0.11.6:', type=('build', 'run'))
depends_on('r-xvector@0.19.8:', type=('build', 'run'), when='@2.48.0:')
depends_on('r-xvector@0.21.4:', type=('build', 'run'), when='@2.50.2:')
depends_on('r-xvector@0.23.2:', type=('build', 'run'), when='@2.52.0:')
depends_on('r-xvector@0.29.2:', type=('build', 'run'), when='@2.58.0:')
depends_on('r-genomeinfodb', type=('build', 'run'), when='@2.62.0:')
depends_on('r-crayon', type=('build', 'run'), when='@2.58.0:')
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